MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2112c · 46 genes shown · anchor pup · open gene page → · ← back to 1 hop

Evidence: Min score 0
dop (requalified) — pup deamidase/depupylase dop pup (family_assigned) — ubiquitin-like protein Pup pup prcA (family_assigned) — proteasome subunit alpha prcA prcB (family_assigned) — proteasome subunit beta prcB mpa (requalified) — proteasome ATPase mpa bpa (requalified) — proteasome activator protein Bpa bpa pafA (requalified) — Pup--protein ligase pafA Rv2239c (family_assigned) — hypothetical protein Rv2239c Rv2114 (dark) — hypothetical protein Rv2114 Rv2113 (family_assigned) — integral membrane protein Rv2113 crp (family_assigned) — cAMP-activated global transcriptional regulator CR crp Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv3626c (requalified) — zinc-dependent metalloprotease Rv3626c mec (requalified) — CysO-cysteine peptidase mec glpK (requalified) — glycerol kinase GlpK glpK rfbE (family_assigned) — ABC transporter ATP-binding protein rfbE glfT1 (requalified) — galactofuranosyl transferase GlfT glfT1 rfbD (family_assigned) — ABC transporter permease rfbD pafB (family_assigned) — YafY family protein pafB pafC (family_assigned) — YafY family protein pafC ahpE (requalified) — peroxiredoxin AhpE ahpE Rv2240c (family_assigned) — hypothetical protein Rv2240c Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c frr (requalified) — ribosome recycling factor frr Rv1626 (family_assigned) — ANTAR domain-containing response regulator Rv1626 rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv1006 (family_assigned) — hypothetical protein Rv1006 Rv1868 (family_assigned) — NAD(P)H-binding protein Rv1868 hsr1 (requalified) — hypothetical protein hsr1 Rv2047c (family_assigned) — sugar epimerase family protein Rv2047c Rv3033 (requalified) — DUF4333 domain-containing protein Rv3033 ptrp (family_assigned) — hypothetical protein ptrp cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT Rv1775 (family_assigned) — hypothetical protein Rv1775 mce3R (family_assigned) — TetR family transcriptional regulator Mce3R mce3R Rv1937 (requalified) — FAD-binding oxidoreductase Rv1937 marP (requalified) — acid resistance serine protease MarP marP Rv3645 (family_assigned) — adenylate/guanylate cyclase domain-containing prot Rv3645 Rv1339 (family_assigned) — hypothetical protein Rv1339 Rv2212 (requalified) — adenylyl cyclase Rv2212 cya (requalified) — adenylate cyclase cya rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.