MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1947 · 42 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1947 (family_assigned) — hypothetical protein Rv1947 dinG (requalified) — ATP-dependent helicase DinG dinG rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv2529 (family_assigned) — hypothetical protein Rv2529 polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 helZ (requalified) — DEAD/DEAH box helicase helZ rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC Rv3479 (requalified) — transmembrane protein Rv3479 Rv1961 (family_assigned) — hypothetical protein Rv1961 mec (requalified) — CysO-cysteine peptidase mec Rv1277 (family_assigned) — hypothetical protein Rv1277 sigA (requalified) — RNA polymerase sigma factor sigA rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA topA (requalified) — type I DNA topoisomerase topA lprE (family_assigned) — LppP/LprE family lipoprotein lprE rplA (requalified) — 50S ribosomal protein L1 rplA recA (requalified) — intein-containing recombinase RecA recA dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK Rv1278 (family_assigned) — AAA family ATPase Rv1278 ligC (requalified) — ATP-dependent DNA ligase ligC Rv2102 (family_assigned) — hypothetical protein Rv2102 Rv2133c (family_assigned) — SCO1664 family protein Rv2133c whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 vapB5 (family_assigned) — type II toxin-antitoxin system Phd/YefM family ant vapB5 Rv0470A (family_assigned) — hypothetical protein Rv0470A Rv1639c (family_assigned) — alpha/beta hydrolase family protein Rv1639c vapC4 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC4 vapC8 (family_assigned) — PIN domain-containing protein vapC8 mpa (requalified) — proteasome ATPase mpa cysM (requalified) — O-phosphoserine sulfhydrylase cysM cysO (requalified) — sulfur carrier protein CysO cysO glpK (requalified) — glycerol kinase GlpK glpK rpsC (requalified) — 30S ribosomal protein S3 rpsC rpsS (requalified) — 30S ribosomal protein S19 rpsS

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.