MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1708 · 46 genes shown · anchor scpA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1708 (requalified) — initiation inhibitor protein Rv1708 scpA (requalified) — segregation/condensation protein A scpA parB (family_assigned) — ParB/RepB/Spo0J family partition protein parB scpB (family_assigned) — SMC-Scp complex subunit ScpB scpB cmk (requalified) — (d)CMP kinase cmk Rv1711 (requalified) — pseudouridine synthase Rv1711 engA (requalified) — ribosome biogenesis GTPase Der engA Rv1707 (family_assigned) — SulP family inorganic anion transporter Rv1707 Rv2647 (requalified) — hypothetical protein Rv2647 ftsK (requalified) — DNA translocase FtsK ftsK Rv1703c (requalified) — O-methyltransferase Rv1703c dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA Rv1714 (family_assigned) — SDR family oxidoreductase Rv1714 smc (requalified) — chromosome segregation protein SMC smc parA (requalified) — chromosome partitioning protein ParA parA gid (requalified) — 16S rRNA (guanine(527)-N(7))-methyltransferase Rsm gid Rv3213c (family_assigned) — AAA family ATPase Rv3213c Rv3920c (family_assigned) — R3H domain-containing nucleic acid-binding protein Rv3920c yidC (requalified) — membrane protein insertase YidC yidC rpsA (requalified) — 30S ribosomal protein S1 rpsA aroA (requalified) — 3-phosphoshikimate 1-carboxyvinyltransferase aroA xthA (requalified) — exodeoxyribonuclease III protein XthA xthA dnaG (requalified) — DNA primase dnaG mas (requalified) — mycocerosate synthase mas pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 pks12 (requalified) — type I polyketide synthase pks12 pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC qcrB (family_assigned) — cytochrome bc complex cytochrome b subunit qcrB Rv2646 (requalified) — tyrosine-type recombinase/integrase Rv2646 Rv2645 (family_assigned) — hypothetical protein Rv2645 Rv2751 (requalified) — class I SAM-dependent methyltransferase Rv2751 pbpB (requalified) — D%2CD-transpeptidase PbpB pbpB xerC (requalified) — tyrosine recombinase XerC xerC aofH (family_assigned) — flavin monoamine oxidase family protein aofH adhB (requalified) — alcohol dehydrogenase B adhB adh (requalified) — zinc-binding dehydrogenase adh adhA (family_assigned) — zinc-binding alcohol dehydrogenase family protein adhA adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK dnaB (requalified) — replicative DNA helicase dnaB recF (requalified) — DNA replication/repair protein RecF recF fadB3 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB fadB3 Rv1716 (family_assigned) — hypothetical protein Rv1716 Rv1717 (family_assigned) — cupin domain-containing protein Rv1717

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.