MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1621c · 43 genes shown · anchor cydC · open gene page → · ← back to 1 hop

Evidence: Min score 0
cydD (family_assigned) — cytochrome biosyntheisis ABC transporter ATP-bindi cydD cydC (family_assigned) — thiol reductant ABC exporter subunit CydC cydC cydB (family_assigned) — cytochrome d ubiquinol oxidase subunit II cydB cydA (family_assigned) — cytochrome D ubiquinol oxidase subunit I CydA cydA Rv1624c (family_assigned) — HdeD family acid-resistance protein Rv1624c cya (requalified) — adenylate cyclase cya Rv2952 (requalified) — phthiotriol/phenolphthiotriol dimycocerosates meth Rv2952 narG (family_assigned) — nitrate reductase subunit alpha narG menC (requalified) — o-succinylbenzoate synthase menC adhD (requalified) — NDMA-dependent alcohol dehydrogenase adhD Rv0955 (family_assigned) — DUF6350 family protein Rv0955 Rv3604c (dark) — DUF6779 domain-containing protein Rv3604c menH (requalified) — demethylmenaquinone methyltransferase menH panD (requalified) — aspartate 1-decarboxylase panD mgtC (family_assigned) — MgtC/SapB family protein mgtC relA (family_assigned) — RelA/SpoT family protein relA pykA (requalified) — pyruvate kinase pykA ndkA (requalified) — nucleoside-diphosphate kinase ndkA cpdA (requalified) — 3'%2C5'-cyclic adenosine monophosphate phosphodies cpdA ribA2 (requalified) — bifunctional 3%2C4-dihydroxy-2-butanone-4-phosphat ribA2 Rv2953 (requalified) — trans-acting enoyl reductase Rv2953 Rv2951c (requalified) — phthiodiolone/phenolphthiodiolone dimycocerosates Rv2951c Rv0329c (requalified) — class I SAM-dependent methyltransferase Rv0329c Rv1405c (requalified) — virulence-associated methyltransferase Rv1405c Rv2067c (requalified) — class I SAM-dependent methyltransferase Rv2067c narH (family_assigned) — nitrate reductase subunit beta narH narI (family_assigned) — respiratory nitrate reductase subunit gamma narI narJ (family_assigned) — nitrate reductase subunit delta narJ narK2 (requalified) — nitrate transporter NarK narK2 narU (family_assigned) — NarK family nitrate/nitrite MFS transporter narU narK1 (requalified) — nitrate/nitrite transporter narK1 menD (requalified) — 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 menD menE (requalified) — o-succinylbenzoate--CoA ligase menE Rv0552 (requalified) — amidohydrolase Rv0552 bpoC (family_assigned) — alpha/beta hydrolase bpoC menB (requalified) — 1,4-dihydroxy-2-naphthoyl-CoA synthase menB fadD8 (requalified) — fatty-acid--CoA ligase FadD8 fadD8 Rv3083 (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv3083 lipR (family_assigned) — alpha/beta hydrolase lipR Rv3085 (family_assigned) — SDR family NAD(P)-dependent oxidoreductase Rv3085 fadD13 (requalified) — long-chain-fatty-acid--CoA ligase FadD13 fadD13 tgs4 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr tgs4 Rv3087 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr Rv3087

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.