MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1541c · 44 genes shown · anchor frdD · open gene page → · ← back to 1 hop

Evidence: Min score 0
lprI (family_assigned) — MliC family protein lprI frdD (family_assigned) — fumarate reductase subunit FrdD frdD glbN (requalified) — group 1 truncated hemoglobin GlbN glbN frdC (family_assigned) — fumarate reductase subunit C frdC vapC24 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC24 Rv2949c (family_assigned) — chorismate pyruvate-lyase family protein Rv2949c Rv0613c (family_assigned) — SEC-C domain-containing protein Rv0613c PPE8 (family_assigned) — PPE family protein PPE8 PPE8 PE_PGRS30 (family_assigned) — PE-PGRS family protein PE_PGRS30 PE_PGRS30 PPE34 (family_assigned) — PPE family protein PPE34 PPE34 PPE55 (family_assigned) — PPE family protein PPE55 PPE55 PPE5 (family_assigned) — PPE family protein PPE5 PPE5 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 frdB (family_assigned) — succinate dehydrogenase iron-sulfur subunit frdB frdA (family_assigned) — fumarate reductase (quinol) flavoprotein subunit frdA sdhB (family_assigned) — succinate dehydrogenase iron-sulfur subunit sdhB Rv0247c (family_assigned) — succinate dehydrogenase/fumarate reductase iron-su Rv0247c sdhA (family_assigned) — succinate dehydrogenase flavoprotein subunit sdhA Rv1544 (family_assigned) — SDR family oxidoreductase Rv1544 Rv1543 (family_assigned) — SDR family NAD(P)-dependent oxidoreductase Rv1543 Rv1545 (dark) — hypothetical protein Rv1545 Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c Rv1546 (family_assigned) — SRPBCC family protein Rv1546 vapB24 (requalified) — antitoxin vapB24 Rv0918 (family_assigned) — DUF1778 domain-containing protein Rv0918 fadD22 (requalified) — p-hydroxybenzoic acid--AMP ligase FadD22 fadD22 fadD29 (requalified) — long-chain-fatty-acid--AMP ligase FadD29 fadD29 pks15 (requalified) — polyketide synthase pks15 entC (requalified) — isochorismate synthase entC Rv0948c (requalified) — chorismate mutase Rv0948c Rv1885c (requalified) — chorismate mutase Rv1885c iniB (requalified) — isoniazid-induced protein IniB iniB Rv1004c (family_assigned) — hypothetical protein Rv1004c PPE6 (family_assigned) — PPE family protein PPE6 PPE6 cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT Rv2082 (dark) — DUF5631 domain-containing protein Rv2082 csm5 (requalified) — type III-A CRISPR-associated RAMP protein Csm5 csm5 Rv2209 (requalified) — MFS transporter Rv2209 PPE54 (family_assigned) — PPE family protein PPE54 PPE54 PPE35 (family_assigned) — PPE family protein PPE35 PPE35 espE (requalified) — type VII secretion system ESX-1 associated protein espE PE_PGRS48 (family_assigned) — PE-PGRS family protein PE_PGRS48 PE_PGRS48 PPE21 (family_assigned) — PPE family protein PPE21 PPE21 PPE62 (family_assigned) — PPE family protein PPE62 PPE62

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.