MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1407 · 46 genes shown · anchor fmt · open gene page → · ← back to 1 hop

Evidence: Min score 0
fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu fmt (requalified) — methionyl-tRNA formyltransferase fmt Rv3404c (requalified) — dTDP-4-amino-4%2C6-dideoxyglucose formyltransferas Rv3404c pstP (requalified) — phosphoserine/threonine phosphatase PstP pstP rplJ (requalified) — 50S ribosomal protein L10 rplJ rpsJ (requalified) — 30S ribosomal protein S10 rpsJ ligA (requalified) — NAD-dependent DNA ligase LigA ligA rplM (requalified) — 50S ribosomal protein L13 rplM pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT rplX (requalified) — 50S ribosomal protein L24 rplX rpe (requalified) — ribulose-phosphate 3-epimerase rpe ribG (requalified) — bifunctional diaminohydroxyphosphoribosylaminopyri ribG truB (requalified) — tRNA pseudouridine(55) synthase TruB truB folD (requalified) — bifunctional methylenetetrahydrofolate dehydrogena folD dfrA (requalified) — dihydrofolate reductase dfrA gcvT (requalified) — aminomethyltransferase gcvT metH (requalified) — methionine synthase metH purN (requalified) — phosphoribosylglycinamide formyltransferase purN Rv3403c (family_assigned) — FAD/NAD(P)-binding protein Rv3403c nusB (requalified) — transcription antitermination factor NusB nusB Rv3402c (family_assigned) — DegT/DnrJ/EryC1/StrS family aminotransferase Rv3402c priA (family_assigned) — primosomal protein N' priA pknB (family_assigned) — Stk1 family PASTA domain-containing Ser/Thr kinase pknB pknA (requalified) — serine/threonine protein kinase PknA pknA rodA (requalified) — cell shape-determining peptidoglycan glycosyltrans rodA pbpA (requalified) — D%2CD-transpeptidase PbpA pbpA pknD (requalified) — serine/threonine protein kinase PknD pknD rplL (requalified) — 50S ribosomal protein L7/L12 rplL rplK (requalified) — 50S ribosomal protein L11 rplK rpsF (requalified) — 30S ribosomal protein S6 rpsF rplR (requalified) — 50S ribosomal protein L18 rplR rplW (requalified) — 50S ribosomal protein L23 rplW rpsP (requalified) — 30S ribosomal protein S16 rpsP rplC (requalified) — 50S ribosomal protein L3 rplC rpmI (requalified) — 50S ribosomal protein L35 rpmI rpsM (requalified) — 30S ribosomal protein S13 rpsM rplN (requalified) — 50S ribosomal protein L14 rplN rpmC (requalified) — 50S ribosomal protein L29 rpmC ligB (requalified) — ATP-dependent DNA ligase ligB Rv3015c (requalified) — methionine synthase Rv3015c leuS (requalified) — leucine--tRNA ligase leuS ruvB (requalified) — Holliday junction branch migration DNA helicase Ru ruvB uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rpmE (requalified) — 50S ribosomal protein L31 rpmE

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.