MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1233c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1233c (family_assigned) — DUF4190 domain-containing protein Rv1233c Rv1232c (requalified) — magnesium transporter Rv1232c Rv1231c (family_assigned) — DUF1003 domain-containing protein Rv1231c Rv1234 (requalified) — general stress protein Rv1234 Rv1230c (family_assigned) — lytic transglycosylase domain-containing protein Rv1230c sugA (family_assigned) — trehalose ABC transporter permease SugA sugA sugC (family_assigned) — trehalose ABC transporter ATP-binding protein SugC sugC lpqY (family_assigned) — trehalose ABC transporter substrate-binding protei lpqY sugB (family_assigned) — trehalose ABC transporter permease SugB sugB ptrp (family_assigned) — hypothetical protein ptrp PPE62 (family_assigned) — PPE family protein PPE62 PPE62 PE_PGRS37 (family_assigned) — PE-PGRS family protein PE_PGRS37 PE_PGRS37 cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT mrp (family_assigned) — Mrp/NBP35 family ATP-binding protein mrp Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c lpqZ (family_assigned) — glycine betaine ABC transporter substrate-binding lpqZ Rv3594 (requalified) — N-acetylmuramoyl-L-alanine amidase Rv3594 Rv2164c (family_assigned) — hypothetical protein Rv2164c Rv3365c (requalified) — sensor histidine kinase Rv3365c ugpC (family_assigned) — ABC transporter ATP-binding protein ugpC ugpC (family_assigned) — sn-glycerol-3-phosphate ABC transporter ATP-bindin ugpC Rv2041c (family_assigned) — sugar ABC transporter substrate-binding protein Rv2041c uspA (family_assigned) — sugar ABC transporter permease uspA Rv2040c (family_assigned) — sugar ABC transporter permease Rv2040c ugpA (family_assigned) — sugar ABC transporter permease ugpA uspB (family_assigned) — sugar ABC transporter permease UspB uspB ugpB (family_assigned) — ABC transporter substrate-binding protein ugpB Rv0539 (requalified) — dolichyl-phosphate sugar synthase Rv0539 Rv0540 (family_assigned) — DUF2064 domain-containing protein Rv0540 Rv1775 (family_assigned) — hypothetical protein Rv1775 Rv3909 (dark) — hypothetical protein Rv3909 PPE5 (family_assigned) — PPE family protein PPE5 PPE5 PPE21 (family_assigned) — PPE family protein PPE21 PPE21 PPE6 (family_assigned) — PPE family protein PPE6 PPE6 PE_PGRS48 (family_assigned) — PE-PGRS family protein PE_PGRS48 PE_PGRS48 PE_PGRS23 (family_assigned) — PE-PGRS family protein PE_PGRS23 PE_PGRS23 PE_PGRS2 (family_assigned) — PE-PGRS family protein PE_PGRS2 PE_PGRS2 mesT (requalified) — epoxide hydrolase MesT mesT PPE35 (family_assigned) — PPE family protein PPE35 PPE35 PPE39 (family_assigned) — PPE family protein PPE39 PPE39 ift (requalified) — necrotizing toxin immunity factor IFT ift esxE (requalified) — ESAT-6 like protein EsxE esxE eccD4 (family_assigned) — type VII secretion system ESX-4 subunit EccD4 eccD4 esxF (requalified) — pore-forming CpnT exporter EsxF esxF Rv3446c (family_assigned) — type VII secretion-associated protein Rv3446c Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.