MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1216c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1216c (family_assigned) — isoprenylcysteine carboxylmethyltransferase family Rv1216c Rv1217c (family_assigned) — multidrug efflux ABC transporter permease Rv1217c Rv1218c (family_assigned) — multidrug efflux ABC transporter ATP-binding prote Rv1218c raaS (family_assigned) — transcriptional regulator RaaS raaS Rv1215c (family_assigned) — CocE/NonD family hydrolase Rv1215c Rv1220c (requalified) — methyltransferase Rv1220c rplC (requalified) — 50S ribosomal protein L3 rplC PE14 (family_assigned) — PE family protein PE14 PE14 Rv3707c (requalified) — hypothetical protein Rv3707c rpmC (requalified) — 50S ribosomal protein L29 rpmC Rv2120c (family_assigned) — glycine zipper 2TM domain-containing protein Rv2120c pirG (requalified) — exported repetitive protein pirG mihF (requalified) — integration host factor MihF mihF Rv1686c (family_assigned) — ABC transporter permease Rv1686c cysA1 (family_assigned) — sulfate ABC transporter ATP-binding protein CysA cysA1 mmpS5 (requalified) — siderophore transporter accessory protein MmpS5 mmpS5 Rv2800 (family_assigned) — CocE/NonD family hydrolase Rv2800 Rv1703c (requalified) — O-methyltransferase Rv1703c sigE (requalified) — RNA polymerase sigma factor SigE sigE rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rplR (requalified) — 50S ribosomal protein L18 rplR rpmA (requalified) — 50S ribosomal protein L27 rpmA rpmE (requalified) — 50S ribosomal protein L31 rpmE rplF (requalified) — 50S ribosomal protein L6 rplF eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 ask (requalified) — aspartate kinase ask asd (requalified) — aspartate-semialdehyde dehydrogenase asd lpqF (requalified) — serine hydrolase lpqF Rv2743c (family_assigned) — hypothetical protein Rv2743c rplU (requalified) — 50S ribosomal protein L21 rplU rpsC (requalified) — 30S ribosomal protein S3 rpsC rpmD (requalified) — 50S ribosomal protein L30 rpmD rplI (requalified) — 50S ribosomal protein L9 rplI rplD (requalified) — 50S ribosomal protein L4 rplD hisG (requalified) — ATP phosphoribosyltransferase hisG hisE (requalified) — phosphoribosyl-ATP pyrophosphatase hisE Rv0315 (requalified) — family 16 glycosylhydrolase Rv0315 Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c Rv0312 (family_assigned) — Hsp70 family protein Rv0312 fbpC (requalified) — diacylglycerol acyltransferase/mycolyltransferase fbpC ripA (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipA ripA Rv1158c (dark) — hypothetical protein Rv1158c mtc28 (family_assigned) — LpqN/LpqT family lipoprotein mtc28 rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsD (requalified) — 30S ribosomal protein S4 rpsD

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.