MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1188 · 46 genes shown · anchor rocA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1188 (requalified) — proline dehydrogenase Rv1188 rocA (requalified) — L-glutamate gamma-semialdehyde dehydrogenase rocA proC (requalified) — pyrroline-5-carboxylate reductase proC pip (family_assigned) — proline-specific peptidase family protein pip Rv1186c (family_assigned) — PucR family transcriptional regulator Rv1186c aldC (requalified) — aldehyde dehydrogenase AldC aldC Rv1249c (family_assigned) — hypothetical protein Rv1249c sigI (requalified) — RNA polymerase sigma factor SigI sigI aldA (requalified) — aldehyde dehydrogenase aldA cstA (family_assigned) — carbon starvation CstA family protein cstA Rv1190 (requalified) — alpha/beta fold hydrolase Rv1190 Rv0223c (requalified) — aldehyde dehydrogenase Rv0223c acs (requalified) — acetate--CoA ligase acs rocD1 (family_assigned) — Probable ornithine aminotransferase (N-terminus pa rocD1 gltB (family_assigned) — glutamate synthase large subunit gltB gadB (requalified) — glutamate decarboxylase gadB gltD (family_assigned) — glutamate synthase subunit beta gltD gdh (requalified) — NAD-glutamate dehydrogenase gdh Rv0499 (family_assigned) — thioesterase family protein Rv0499 proB (requalified) — glutamate 5-kinase proB Rv0498 (requalified) — sugar phosphate isomerase/epimerase Rv0498 mas (requalified) — mycocerosate synthase mas ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 pks12 (requalified) — type I polyketide synthase pks12 moaR1 (family_assigned) — transcriptional regulator MoaR1 moaR1 Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 Rv2474c (family_assigned) — hypothetical protein Rv2474c fadD21 (requalified) — fatty-acid--AMP ligase FAAL21/FadD21 fadD21 Rv2857c (requalified) — 3-oxoacyl-ACP reductase Rv2857c glnA4 (family_assigned) — glutamine synthetase family protein glnA4 Rv2859c (requalified) — gamma-glutamyl-gamma-aminobutyrate hydrolase Rv2859c Rv1691 (family_assigned) — hypothetical protein Rv1691 Rv2267c (requalified) — sulfotransferase Rv2267c Rv0264c (family_assigned) — allophanate hydrolase subunit 1 Rv0264c Rv1248c (family_assigned) — multifunctional oxoglutarate decarboxylase/oxoglut Rv1248c Rv0263c (family_assigned) — 5-oxoprolinase/urea amidolyase family protein Rv0263c Rv1245c (family_assigned) — SDR family NAD(P)-dependent oxidoreductase Rv1245c Rv1171 (family_assigned) — hypothetical protein Rv1171 Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c cmr (family_assigned) — HTH-type transcriptional regulator Cmr cmr Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv0765c (family_assigned) — SDR family oxidoreductase Rv0765c Rv0770 (requalified) — NAD(P)-dependent oxidoreductase Rv0770

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.