MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1179c · 42 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1179c (family_assigned) — DEAD/DEAH box helicase family protein Rv1179c dinG (requalified) — ATP-dependent helicase DinG dinG rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 mec (requalified) — CysO-cysteine peptidase mec Rv2529 (family_assigned) — hypothetical protein Rv2529 rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC helZ (requalified) — DEAD/DEAH box helicase helZ PE_PGRS12 (family_assigned) — PE-PGRS family protein PE_PGRS12 PE_PGRS12 PE_PGRS62 (family_assigned) — PE-PGRS family protein PE_PGRS62 PE_PGRS62 Rv1277 (family_assigned) — hypothetical protein Rv1277 sigA (requalified) — RNA polymerase sigma factor sigA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK recA (requalified) — intein-containing recombinase RecA recA Rv1278 (family_assigned) — AAA family ATPase Rv1278 ligC (requalified) — ATP-dependent DNA ligase ligC mpa (requalified) — proteasome ATPase mpa cysM (requalified) — O-phosphoserine sulfhydrylase cysM cysO (requalified) — sulfur carrier protein CysO cysO glpK (requalified) — glycerol kinase GlpK glpK rpsC (requalified) — 30S ribosomal protein S3 rpsC rpsS (requalified) — 30S ribosomal protein S19 rpsS topA (requalified) — type I DNA topoisomerase topA lprE (family_assigned) — LppP/LprE family lipoprotein lprE rplA (requalified) — 50S ribosomal protein L1 rplA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 Rv2102 (family_assigned) — hypothetical protein Rv2102 Rv2133c (family_assigned) — SCO1664 family protein Rv2133c alaS (requalified) — alanine--tRNA ligase alaS PE_PGRS13 (family_assigned) — PE-PGRS family protein PE_PGRS13 PE_PGRS13 Rv2267c (requalified) — sulfotransferase Rv2267c Rv3529c (requalified) — TLR2-mediated response inhibitor Rv3529c Rv1691 (family_assigned) — hypothetical protein Rv1691

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.