MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1110 · 36 genes shown · anchor gcpE · open gene page → · ← back to 1 hop

Evidence: Min score 0
lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi dxs1 (requalified) — 1-deoxy-D-xylulose 5-phosphate synthase dxs1 xseB (family_assigned) — exodeoxyribonuclease VII small subunit xseB xseA (family_assigned) — exodeoxyribonuclease VII large subunit xseA Rv1109c (requalified) — lipid droplet-associated protein Rv1109c ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr Rv2867c (family_assigned) — GNAT family N-acetyltransferase Rv2867c rip (requalified) — zinc metalloprotease Rip rip rpsH (requalified) — 30S ribosomal protein S8 rpsH rplD (requalified) — 50S ribosomal protein L4 rplD rpsK (requalified) — 30S ribosomal protein S11 rpsK rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsD (requalified) — 30S ribosomal protein S4 rpsD grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 phyA (requalified) — presqualene diphosphate synthase HpnD phyA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c dxs2 (requalified) — 1-deoxy-D-xylulose-5-phosphate synthase dxs2 thiG (requalified) — thiazole synthase thiG Rv1106c (requalified) — 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-is Rv1106c hemC (requalified) — hydroxymethylbilane synthase hemC rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA folD (requalified) — bifunctional methylenetetrahydrofolate dehydrogena folD nusG (requalified) — transcription termination/antitermination protein nusG Rv2091c (family_assigned) — DUF4333 domain-containing protein Rv2091c Rv3850 (family_assigned) — DUF6474 family protein Rv3850

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.