MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1080c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
greA (requalified) — transcription elongation factor GreA greA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rpsO (requalified) — 30S ribosomal protein S15 rpsO Rv1081c (dark) — DUF4307 domain-containing protein Rv1081c rpsD (requalified) — 30S ribosomal protein S4 rpsD rplD (requalified) — 50S ribosomal protein L4 rplD mca (requalified) — mycothiol conjugate amidase Mca mca rplS (requalified) — 50S ribosomal protein L19 rplS gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI rpmE (requalified) — 50S ribosomal protein L31 rpmE whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 sigA (requalified) — RNA polymerase sigma factor sigA sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ rplR (requalified) — 50S ribosomal protein L18 rplR rpmA (requalified) — 50S ribosomal protein L27 rpmA rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rplU (requalified) — 50S ribosomal protein L21 rplU Rv1083 (dark) — hypothetical protein Rv1083 Rv1084 (family_assigned) — thioredoxin domain-containing protein Rv1084 lppL (family_assigned) — hypothetical protein lppL Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv2732c (family_assigned) — hypothetical protein Rv2732c rplC (requalified) — 50S ribosomal protein L3 rplC rpsP (requalified) — 30S ribosomal protein S16 rpsP rpmI (requalified) — 50S ribosomal protein L35 rpmI rplN (requalified) — 50S ribosomal protein L14 rplN rpmC (requalified) — 50S ribosomal protein L29 rpmC Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c mshD (requalified) — mycothiol synthase mshD Rv0360c (family_assigned) — hypothetical protein Rv0360c rpsR1 (requalified) — 30S ribosomal protein S18 rpsR1 rplB (requalified) — 50S ribosomal protein L2 rplB rpmH (requalified) — 50S ribosomal protein L34 rpmH rpsF (requalified) — 30S ribosomal protein S6 rpsF rplP (requalified) — 50S ribosomal protein L16 rplP rhlE (requalified) — DEAD/DEAH box helicase rhlE pepR (family_assigned) — pitrilysin family protein pepR

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.