MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0989c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 idsB (family_assigned) — polyprenyl synthetase family protein idsB idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 phyA (requalified) — presqualene diphosphate synthase HpnD phyA Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 Rv0990c (family_assigned) — SAF domain-containing protein Rv0990c rnj (requalified) — ribonuclease J rnj rpsE (requalified) — 30S ribosomal protein S5 rpsE hemC (requalified) — hydroxymethylbilane synthase hemC ndkA (requalified) — nucleoside-diphosphate kinase ndkA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi menJ (requalified) — menaquinone reductase menJ Rv3399 (requalified) — S-adenosylmethionine-dependent methyltransferase Rv3399 lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c Rv3657c (family_assigned) — membrane protein Rv3657c Rv3658c (family_assigned) — type II secretion system F family protein Rv3658c ssd (requalified) — septum site-determining protein Ssd ssd Rv3655c (requalified) — apoptosis inhibitor Rv3655c Rv0991c (family_assigned) — FmdB family zinc ribbon protein Rv0991c dapA (requalified) — 4-hydroxy-tetrahydrodipicolinate synthase dapA thyX (requalified) — FAD-dependent thymidylate synthase thyX hsdM (requalified) — class I SAM-dependent DNA methyltransferase hsdM Rv2762c (family_assigned) — winged helix-turn-helix domain-containing protein Rv2762c raiA (requalified) — ribosome-associated translation inhibitor RaiA raiA rpsM (requalified) — 30S ribosomal protein S13 rpsM rpmI (requalified) — 50S ribosomal protein L35 rpmI rpsP (requalified) — 30S ribosomal protein S16 rpsP rplC (requalified) — 50S ribosomal protein L3 rplC rplN (requalified) — 50S ribosomal protein L14 rplN rpmC (requalified) — 50S ribosomal protein L29 rpmC hemD (requalified) — uroporphyrin-III C-methyltransferase hemD hemB (requalified) — porphobilinogen synthase hemB hemA (requalified) — glutamyl-tRNA reductase hemA cysG (requalified) — uroporphyrinogen-III C-methyltransferase cysG hemE (requalified) — uroporphyrinogen decarboxylase hemE Rv0260c (requalified) — uroporphyrinogen-III synthase Rv0260c rpsJ (requalified) — 30S ribosomal protein S10 rpsJ rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsO (requalified) — 30S ribosomal protein S15 rpsO rpsB (requalified) — 30S ribosomal protein S2 rpsB rpsG (requalified) — 30S ribosomal protein S7 rpsG

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.