MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0937c · 44 genes shown · anchor ligD · open gene page → · ← back to 1 hop

Evidence: Min score 0
mku (requalified) — Ku protein mku ligD (requalified) — ATP-dependent DNA ligase ligD ligD (requalified) — non-homologous end-joining DNA ligase ligD Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c ligC (requalified) — ATP-dependent DNA ligase ligC uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 ligB (requalified) — ATP-dependent DNA ligase ligB Rv0939 (family_assigned) — fumarylacetoacetate hydrolase family protein Rv0939 uvrD2 (requalified) — ATP-dependent DNA helicase UvrD2 uvrD2 adnA (requalified) — ATP-dependent DNA helicase AdnA adnA adnB (requalified) — ATP-dependent DNA helicase AdnB adnB recA (requalified) — intein-containing recombinase RecA recA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 Rv2828A (dark) — hypothetical protein Rv2828A lhr (requalified) — ATP-dependent helicase lhr Rv3732 (dark) — DUF2330 domain-containing protein Rv3732 Rv0268c (family_assigned) — hypothetical protein Rv0268c fadD2 (requalified) — long-chain-fatty-acid--CoA ligase FadD2 fadD2 Rv0265c (family_assigned) — iron ABC transporter substrate-binding lipoprotein Rv0265c uvrB (family_assigned) — excinuclease ABC subunit UvrB uvrB Rv0948c (requalified) — chorismate mutase Rv0948c ligA (requalified) — NAD-dependent DNA ligase LigA ligA fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 Rv0331 (requalified) — FAD/NAD(P)-binding oxidoreductase Rv0331 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 pks12 (requalified) — type I polyketide synthase pks12 pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 Rv2191 (family_assigned) — hypothetical protein Rv2191 nudC (requalified) — NAD(+) diphosphatase nudC radA (requalified) — DNA repair protein RadA radA Rv3200c (family_assigned) — potassium channel family protein Rv3200c pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT recX (requalified) — recombination regulator RecX recX lexA (requalified) — transcriptional repressor LexA lexA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA sigA (requalified) — RNA polymerase sigma factor sigA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.