MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0736 · 46 genes shown · anchor sigL · open gene page → · ← back to 1 hop

Evidence: Min score 0
rslA (requalified) — anti-sigma-L factor RslA rslA sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL Rv1145 (requalified) — transmembrane transport protein Rv1145 Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737 Rv1138c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv1138c pks10 (requalified) — type III polyketide synthase pks10 Rv1146 (requalified) — transmembrane transport protein Rv1146 Rv3773c (family_assigned) — TIGR03086 family metal-binding protein Rv3773c Rv0048c (family_assigned) — DUF1707 domain-containing protein Rv0048c Rv2079 (family_assigned) — alpha/beta hydrolase Rv2079 sigI (requalified) — RNA polymerase sigma factor SigI sigI Rv2423 (requalified) — class I SAM-dependent methyltransferase Rv2423 Rv3779 (family_assigned) — DUF6541 family protein Rv3779 rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ mapA (requalified) — methionine aminopeptidase mapA mmpL6 (requalified) — transmembrane transport protein MmpL6 mmpL6 Rv1147 (family_assigned) — methyltransferase domain-containing protein Rv1147 mmpL2 (requalified) — RND transporter MmpL2 mmpL2 mmpL1 (requalified) — RND transporter MmpL1 mmpL1 Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 embR (requalified) — response regulator transcription factor EmbR embR Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c cobB (requalified) — NAD-dependent protein deacylase cobB oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS kdpE (requalified) — two-component system response regulator KdpE kdpE Rv1139c (family_assigned) — isoprenylcysteine carboxyl methyltransferase famil Rv1139c Rv1137c (dark) — Hypothetical protein Rv1137c pks11 (requalified) — type III polyketide synthase pks11 fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA ppsB (requalified) — phthiocerol type I polyketide synthase PpsB ppsB ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC pks4 (requalified) — polyketide beta-ketoacyl synthase pks4 Rv2714 (family_assigned) — PAC2 family protein Rv2714 mmpL11 (requalified) — RND transporter MmpL11 mmpL11 PE_PGRS22 (family_assigned) — PE-PGRS family protein PE_PGRS22 PE_PGRS22 echA21 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA21 lipE (requalified) — lipase LipE lipE Rv3435c (family_assigned) — DUF4436 domain-containing protein Rv3435c Rv1171 (family_assigned) — hypothetical protein Rv1171 Rv0875c (dark) — DUF2771 domain-containing protein Rv0875c Rv0188 (requalified) — SPW repeat protein Rv0188 Rv2078 (family_assigned) — DUF2563 family protein Rv2078 lppJ (family_assigned) — hypothetical protein lppJ

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.