MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0670 · 46 genes shown · anchor lpqP · open gene page → · ← back to 1 hop

Evidence: Min score 0
end (requalified) — deoxyribonuclease IV end lpqP (family_assigned) — PHB depolymerase family esterase lpqP xthA (requalified) — exodeoxyribonuclease III protein XthA xthA fadE8 (family_assigned) — acyl-CoA dehydrogenase family protein fadE8 Rv0674 (family_assigned) — PaaX family transcriptional regulator C-terminal d Rv0674 echA4 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA4 echA5 (requalified) — enoyl-CoA hydratase EchA5 echA5 rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC Rv0669c (requalified) — neutral ceramidase Rv0669c Rv1156 (requalified) — HhH-GPD-type base excision DNA repair protein Rv1156 rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB pfkA (requalified) — ATP-dependent 6-phosphofructokinase pfkA Rv2529 (family_assigned) — hypothetical protein Rv2529 def (requalified) — peptide deformylase def Rv0428c (family_assigned) — GNAT family N-acetyltransferase Rv0428c mutY (requalified) — A/G-specific adenine glycosylase mutY lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN fadB (requalified) — fatty oxidation protein FadB fadB fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c moxR2 (family_assigned) — MoxR family ATPase moxR2 Rv3263 (requalified) — class I SAM-dependent methyltransferase Rv3263 fadE7 (requalified) — acyl-CoA dehydrogenase fadE7 fadE23 (family_assigned) — acyl-CoA dehydrogenase family protein fadE23 fadE19 (family_assigned) — acyl-CoA dehydrogenase family protein fadE19 fadB2 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB2 fadB2 fadE13 (family_assigned) — acyl-CoA dehydrogenase family protein fadE13 rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 sigA (requalified) — RNA polymerase sigma factor sigA sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL nagA (requalified) — N-acetylglucosamine-6-phosphate deacetylase nagA zwf2 (requalified) — glucose-6-phosphate dehydrogenase zwf2 zwf1 (requalified) — glucose-6-phosphate 1-dehydrogenase zwf1 dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 dnaE2 (requalified) — error-prone DNA polymerase dnaE2 Rv2828A (dark) — hypothetical protein Rv2828A ligC (requalified) — ATP-dependent DNA ligase ligC Rv0393 (family_assigned) — hypothetical protein Rv0393 Rv1155 (requalified) — PPOX class F420-dependent oxidoreductase Rv1155 sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB pgi (requalified) — glucose-6-phosphate isomerase pgi fba (requalified) — class II fructose-bisphosphate aldolase fba guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.