MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0631c · 46 genes shown · anchor recB · open gene page → · ← back to 1 hop

Evidence: Min score 0
recC (family_assigned) — exodeoxyribonuclease V subunit gamma recC recB (family_assigned) — exodeoxyribonuclease V subunit beta recB recD (family_assigned) — exodeoxyribonuclease V subunit alpha recD Rv2311 (family_assigned) — hypothetical protein Rv2311 Rv0628c (family_assigned) — FIST N-terminal domain-containing protein Rv0628c Rv2037c (family_assigned) — patatin-like phospholipase family protein Rv2037c echA3 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA3 ligC (requalified) — ATP-dependent DNA ligase ligC uvrC (family_assigned) — excinuclease ABC subunit UvrC uvrC ligD (requalified) — ATP-dependent DNA ligase ligD dinF (family_assigned) — MATE family efflux transporter dinF alkA (family_assigned) — bifunctional regulatory protein/DNA repair enzyme alkA dinX (requalified) — DNA polymerase IV dinX Rv0955 (family_assigned) — DUF6350 family protein Rv0955 truB (requalified) — tRNA pseudouridine(55) synthase TruB truB dinG (requalified) — ATP-dependent helicase DinG dinG Rv2312 (dark) — hypothetical protein Rv2312 Rv2529 (family_assigned) — hypothetical protein Rv2529 Rv2041c (family_assigned) — sugar ABC transporter substrate-binding protein Rv2041c Rv2039c (family_assigned) — carbohydrate ABC transporter permease Rv2039c ugpC (family_assigned) — sn-glycerol-3-phosphate ABC transporter ATP-bindin ugpC Rv2040c (family_assigned) — sugar ABC transporter permease Rv2040c pncA (requalified) — pyrazinamidase PncA pncA Rv2042c (family_assigned) — ketosteroid isomerase family protein Rv2042c fadE2 (requalified) — acyl-CoA dehydrogenase fadE2 fadE7 (requalified) — acyl-CoA dehydrogenase fadE7 fadE23 (family_assigned) — acyl-CoA dehydrogenase family protein fadE23 fadE1 (requalified) — acyl-CoA dehydrogenase FadE1 fadE1 fadE19 (family_assigned) — acyl-CoA dehydrogenase family protein fadE19 fadE4 (family_assigned) — acyl-CoA dehydrogenase family protein fadE4 ligD (requalified) — non-homologous end-joining DNA ligase ligD Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv2090 (requalified) — 5'-3' exonuclease Rv2090 mku (requalified) — Ku protein mku uvrB (family_assigned) — excinuclease ABC subunit UvrB uvrB rapZ (requalified) — RNase adapter RapZ rapZ cuvA (requalified) — carbon utilization/virulence protein CuvA cuvA whiA (family_assigned) — DNA-binding protein WhiA whiA uvrA (family_assigned) — excinuclease ABC subunit UvrA uvrA ribA2 (requalified) — bifunctional 3%2C4-dihydroxy-2-butanone-4-phosphat ribA2 Rv0939 (family_assigned) — fumarylacetoacetate hydrolase family protein Rv0939 polA (requalified) — DNA polymerase I polA infB (requalified) — translation initiation factor IF-2 infB rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.