MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0562 · 44 genes shown · anchor menJ · open gene page → · ← back to 1 hop

Evidence: Min score 0
grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 phyA (requalified) — presqualene diphosphate synthase HpnD phyA menJ (requalified) — menaquinone reductase menJ Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c htpX (requalified) — zinc metalloprotease HtpX htpX ndkA (requalified) — nucleoside-diphosphate kinase ndkA Rv0560c (requalified) — benzoquinone methyltransferase Rv0560c rnj (requalified) — ribonuclease J rnj Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi Rv3399 (requalified) — S-adenosylmethionine-dependent methyltransferase Rv3399 fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA Rv0559c (family_assigned) — DUF732 domain-containing protein Rv0559c fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 Rv2360c (family_assigned) — hypothetical protein Rv2360c recO (requalified) — DNA repair protein RecO recO amiA2 (requalified) — amidase amiA2 dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr cdsA (requalified) — phosphatidate cytidylyltransferase cdsA 35kd_ag (family_assigned) — hypothetical protein 35kd_ag Rv3837c (family_assigned) — histidine phosphatase family protein Rv3837c pepD (requalified) — serine protease PepD pepD Rv2694c (family_assigned) — OB-fold nucleic acid binding domain-containing pro Rv2694c moaB2 (family_assigned) — MogA/MoaB family molybdenum cofactor biosynthesis moaB2 rpsJ (requalified) — 30S ribosomal protein S10 rpsJ rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsO (requalified) — 30S ribosomal protein S15 rpsO rpsB (requalified) — 30S ribosomal protein S2 rpsB rpsG (requalified) — 30S ribosomal protein S7 rpsG rpsP (requalified) — 30S ribosomal protein S16 rpsP Rv3160c (family_assigned) — helix-turn-helix domain-containing protein Rv3160c eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 mmpL5 (requalified) — siderophore RND transporter MmpL5 mmpL5 dapA (requalified) — 4-hydroxy-tetrahydrodipicolinate synthase dapA thyX (requalified) — FAD-dependent thymidylate synthase thyX hsdM (requalified) — class I SAM-dependent DNA methyltransferase hsdM Rv2762c (family_assigned) — winged helix-turn-helix domain-containing protein Rv2762c raiA (requalified) — ribosome-associated translation inhibitor RaiA raiA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.