MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0559c · 46 genes shown · anchor menJ · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv0559c (family_assigned) — DUF732 domain-containing protein Rv0559c menJ (requalified) — menaquinone reductase menJ Rv0560c (requalified) — benzoquinone methyltransferase Rv0560c grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 Rv0455c (family_assigned) — DUF5078 domain-containing protein Rv0455c Rv2536 (family_assigned) — B-4DMT family transporter Rv2536 secE2 (family_assigned) — protein translocase subunit SecE secE2 lipM (family_assigned) — alpha/beta hydrolase lipM Rv1508c (family_assigned) — glycosyltransferase 87 family protein Rv1508c narK3 (requalified) — nitrate/nitrite transporter narK3 Rv3707c (requalified) — hypothetical protein Rv3707c fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA htpX (requalified) — zinc metalloprotease HtpX htpX fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB Rv3160c (family_assigned) — helix-turn-helix domain-containing protein Rv3160c eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 mmpL5 (requalified) — siderophore RND transporter MmpL5 mmpL5 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 phyA (requalified) — presqualene diphosphate synthase HpnD phyA echA2 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA2 Rv0457c (family_assigned) — prolyl oligopeptidase family protein Rv0457c Rv0397A (dark) — hypothetical protein Rv0397A Rv0338c (requalified) — heterodisulfide reductase-related iron-sulfur bind Rv0338c gpm1 (requalified) — 2,3-bisphosphoglycerate-dependent phosphoglycerate gpm1 pepQ (family_assigned) — Xaa-Pro peptidase family protein pepQ efp (requalified) — elongation factor P efp nusB (requalified) — transcription antitermination factor NusB nusB Rv2532c (requalified) — antitermination protein NusB Rv2532c Rv2531c (requalified) — amino acid decarboxylase Rv2531c vapB39 (requalified) — antitoxin VapB39 vapB39 Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 Rv0378 (dark) — hypothetical protein Rv0378 Rv3091 (family_assigned) — patatin-like phospholipase family protein Rv3091 secY (family_assigned) — preprotein translocase subunit SecY secY secG (family_assigned) — preprotein translocase subunit SecG secG secF (family_assigned) — protein translocase subunit SecF secF Rv2283 (dark) — hypothetical protein Rv2283 Rv2285 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr Rv2285 Rv0310c (family_assigned) — nuclear transport factor 2 family protein Rv0310c Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c rpmD (requalified) — 50S ribosomal protein L30 rpmD lipI (family_assigned) — alpha/beta hydrolase lipI Rv1508A (family_assigned) — hypothetical protein Rv1508A

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.