MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0142 · 46 genes shown · anchor rslA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv0142 (requalified) — DNA-3-methyladenine glycosylase Rv0142 xthA (requalified) — exodeoxyribonuclease III protein XthA xthA Rv0141c (family_assigned) — nuclear transport factor 2 family protein Rv0141c rslA (requalified) — anti-sigma-L factor RslA rslA ligC (requalified) — ATP-dependent DNA ligase ligC adnA (requalified) — ATP-dependent DNA helicase AdnA adnA ligB (requalified) — ATP-dependent DNA ligase ligB Rv0786c (requalified) — MBL fold metallo-hydrolase Rv0786c end (requalified) — deoxyribonuclease IV end Rv1171 (family_assigned) — hypothetical protein Rv1171 Rv1635c (family_assigned) — glycosyltransferase family 39 protein Rv1635c Rv2090 (requalified) — 5'-3' exonuclease Rv2090 polA (requalified) — DNA polymerase I polA def (requalified) — peptide deformylase def Rv0428c (family_assigned) — GNAT family N-acetyltransferase Rv0428c mutY (requalified) — A/G-specific adenine glycosylase mutY lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL Rv1145 (requalified) — transmembrane transport protein Rv1145 Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737 Rv1138c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv1138c pks10 (requalified) — type III polyketide synthase pks10 Rv1146 (requalified) — transmembrane transport protein Rv1146 ligD (requalified) — non-homologous end-joining DNA ligase ligD Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c mku (requalified) — Ku protein mku adnB (requalified) — ATP-dependent DNA helicase AdnB adnB uvrD2 (requalified) — ATP-dependent DNA helicase UvrD2 uvrD2 Rv2191 (family_assigned) — hypothetical protein Rv2191 nudC (requalified) — NAD(+) diphosphatase nudC radA (requalified) — DNA repair protein RadA radA Rv3200c (family_assigned) — potassium channel family protein Rv3200c ligA (requalified) — NAD-dependent DNA ligase LigA ligA fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 Rv0787 (dark) — hypothetical protein Rv0787 purQ (family_assigned) — phosphoribosylformylglycinamidine synthase subunit purQ Rv0787A (family_assigned) — hypothetical protein Rv0787A Rv2199c (family_assigned) — cytochrome c oxidase subunit 4 Rv2199c lsr2 (requalified) — histone-like nucleoid-structuring protein Lsr2 lsr2 qcrC (requalified) — cytochrome c qcrC lpqP (family_assigned) — PHB depolymerase family esterase lpqP fadE8 (family_assigned) — acyl-CoA dehydrogenase family protein fadE8 Rv0674 (family_assigned) — PaaX family transcriptional regulator C-terminal d Rv0674 echA4 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA4 echA5 (requalified) — enoyl-CoA hydratase EchA5 echA5

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.