MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0116c · 46 genes shown · anchor oxyS · open gene page → · ← back to 1 hop

Evidence: Min score 0
ldtA (requalified) — L%2CD-transpeptidase LdtMt1 ldtA oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS Rv3015c (requalified) — methionine synthase Rv3015c rodA (requalified) — cell shape-determining peptidoglycan glycosyltrans rodA Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv1140 (family_assigned) — integral membrane protein Rv1140 dacB2 (family_assigned) — penicillin-binding protein DacB2 dacB2 Rv3778c (family_assigned) — cysteine desulfurase-like protein Rv3778c hddA (requalified) — D-alpha-D-heptose-7-phosphate kinase HddA hddA ponA2 (requalified) — bifunctional penicillin-insensitive transglycosyla ponA2 Rv1863c (family_assigned) — integral membrane protein Rv1863c ponA1 (requalified) — bifunctional penicillin-insensitive transglycosyla ponA1 PE27 (family_assigned) — PE family protein PE27 PE27 Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c Rv1931c (family_assigned) — transcriptional regulator Rv1931c mftR (family_assigned) — mycofactocin system transcriptional regulator mftR Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 kdpE (requalified) — two-component system response regulator KdpE kdpE Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c lpqA (family_assigned) — sensor domain-containing protein lpqA Rv2172c (requalified) — mycobacterial-type methylenetetrahydrofolate reduc Rv2172c ligA (requalified) — NAD-dependent DNA ligase LigA ligA metK (requalified) — S-adenosylmethionine synthetase metK ldtMt3 (requalified) — L%2CD-transpeptidase LdtMt3 ldtMt3 Rv0192 (family_assigned) — hypothetical protein Rv0192 pbpA (requalified) — D%2CD-transpeptidase PbpA pbpA pknB (family_assigned) — Stk1 family PASTA domain-containing Ser/Thr kinase pknB pknA (requalified) — serine/threonine protein kinase PknA pknA pstP (requalified) — phosphoserine/threonine phosphatase PstP pstP pbpB (requalified) — D%2CD-transpeptidase PbpB pbpB fhaB (family_assigned) — FHA domain-containing protein fhaB Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaN (family_assigned) — DNA polymerase III subunit beta dnaN dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2191 (family_assigned) — hypothetical protein Rv2191 dnaQ (family_assigned) — DEDDh family exonuclease dnaQ Rv1375 (family_assigned) — YcaO-like family protein Rv1375 Rv1765c (family_assigned) — hypothetical protein Rv1765c Rv2015c (requalified) — HNH endonuclease signature motif containing protei Rv2015c accD3 (family_assigned) — carboxyl transferase domain-containing protein accD3 Rv1747 (family_assigned) — ATP-binding cassette domain-containing protein Rv1747 Rv1586c (family_assigned) — recombinase family protein Rv1586c dacB1 (requalified) — D-alanyl-D-alanine carboxypeptidase DacB1 dacB1 dacB (requalified) — D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala dacB ldtB (requalified) — L%2CD-transpeptidase LdtMt2 ldtB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.