MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0007 · 46 genes shown · anchor gyrA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv0007 (dark) — DUF3566 domain-containing protein Rv0007 gyrA (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit A gyrA Rv1024 (family_assigned) — septum formation initiator family protein Rv1024 gyrB (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit B gyrB Rv3909 (dark) — hypothetical protein Rv3909 Rv2164c (family_assigned) — hypothetical protein Rv2164c ptrp (family_assigned) — hypothetical protein ptrp Rv3835 (family_assigned) — septum formation family protein Rv3835 Rv2843 (family_assigned) — hypothetical protein Rv2843 Rv3258c (dark) — hypothetical protein Rv3258c Rv3658c (family_assigned) — type II secretion system F family protein Rv3658c Rv0004 (requalified) — DNA replication protein DciA Rv0004 Rv2709 (dark) — DUF3099 domain-containing protein Rv2709 eccE5 (family_assigned) — type VII secretion system ESX-5 subunit EccE5 eccE5 ubiA (requalified) — decaprenyl-phosphate phosphoribosyltransferase ubiA atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH rplK (requalified) — 50S ribosomal protein L11 rplK ftsQ (requalified) — cell division protein FtsQ ftsQ eno (requalified) — phosphopyruvate hydratase eno Rv1025 (dark) — hypothetical protein Rv1025 ppx2 (requalified) — exopolyphosphatase Ppx2 ppx2 mfd (requalified) — transcription-repair coupling factor mfd lpqU (requalified) — lytic murein transglycosylase lpqU mfpA (requalified) — pentapeptide repeat protein MfpA mfpA Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 recF (requalified) — DNA replication/repair protein RecF recF dnaN (family_assigned) — DNA polymerase III subunit beta dnaN murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ mutT4 (requalified) — NUDIX hydrolase mutT4 sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM rsmA (requalified) — anti-sigma-M factor RsmA rsmA Rv3906c (requalified) — pullulanase Rv3906c pbpB (requalified) — D%2CD-transpeptidase PbpB pbpB rsmH (requalified) — 16S rRNA (cytosine(1402)-N(4))-methyltransferase R rsmH mraZ (requalified) — division/cell wall cluster transcriptional repress mraZ Rv0539 (requalified) — dolichyl-phosphate sugar synthase Rv0539 Rv0540 (family_assigned) — DUF2064 domain-containing protein Rv0540 cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT Rv1775 (family_assigned) — hypothetical protein Rv1775 Rv3836 (family_assigned) — metallopeptidase family protein Rv3836 serS (requalified) — serine--tRNA ligase serS Rv2844 (family_assigned) — ferritin-like domain-containing protein Rv2844 nusA (requalified) — transcription termination factor NusA nusA rimP (requalified) — ribosome maturation factor RimP rimP Rv3259 (family_assigned) — metallopeptidase family protein Rv3259 Rv3587c (family_assigned) — hypothetical protein Rv3587c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.