MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0003 · 46 genes shown · anchor dnaN · open gene page → · ← back to 1 hop

Evidence: Min score 0
recF (requalified) — DNA replication/repair protein RecF recF dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv0004 (requalified) — DNA replication protein DciA Rv0004 gyrB (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit B gyrB dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA Rv0007 (dark) — DUF3566 domain-containing protein Rv0007 Rv2147c (requalified) — cell division protein SepF Rv2147c gyrA (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit A gyrA lppK (family_assigned) — hypothetical protein lppK rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c gnd2 (requalified) — decarboxylating 6-phosphogluconate dehydrogenase gnd2 recR (requalified) — recombination mediator RecR recR polA (requalified) — DNA polymerase I polA dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX Rv2256c (dark) — hypothetical protein Rv2256c rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA mfpA (requalified) — pentapeptide repeat protein MfpA mfpA Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 dnaB (requalified) — replicative DNA helicase dnaB parA (requalified) — chromosome partitioning protein ParA parA Rv3213c (family_assigned) — AAA family ATPase Rv3213c Rv1024 (family_assigned) — septum formation initiator family protein Rv1024 Rv3909 (dark) — hypothetical protein Rv3909 Rv2164c (family_assigned) — hypothetical protein Rv2164c ptrp (family_assigned) — hypothetical protein ptrp ftsZ (requalified) — cell division protein FtsZ ftsZ Rv2148c (family_assigned) — YggS family pyridoxal phosphate-dependent enzyme Rv2148c Rv2146c (family_assigned) — YggT family protein Rv2146c yfiH (family_assigned) — laccase domain-containing protein yfiH wag31 (requalified) — cell wall synthesis protein Wag31 wag31 murF (requalified) — UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin murF eccE5 (family_assigned) — type VII secretion system ESX-5 subunit EccE5 eccE5 ubiA (requalified) — decaprenyl-phosphate phosphoribosyltransferase ubiA atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH rplK (requalified) — 50S ribosomal protein L11 rplK Rv2090 (requalified) — 5'-3' exonuclease Rv2090 helZ (requalified) — DEAD/DEAH box helicase helZ ligC (requalified) — ATP-dependent DNA ligase ligC ligB (requalified) — ATP-dependent DNA ligase ligB infB (requalified) — translation initiation factor IF-2 infB nrnA (requalified) — bifunctional oligoribonuclease/PAP phosphatase Nrn nrnA dinF (family_assigned) — MATE family efflux transporter dinF

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.